Installing SSTMap06 Dec 2019
##Step 1: Install Anaconda
The main requirement for installation of
SSTMap is the anaconda python distribution.
For instructions on how to download and install Anaconda, please go to Anaconda Download page.
Alternatively, the Anaconda installation can be also done with the following two commands.
wget https://repo.continuum.io/archive/Anaconda3-2019.10-Linux-x86_64.sh bash Anaconda3-2019.10-Linux-x86_64.sh
##Step 2: Create a virtual enviroment for SSTMap
The virtual enviornment can be created as follows:
conda create -n sstmap_py36 python=3.6 source activate sstmap_py36
##Step 3: Get the gitHub Source Code by git
You can get the source code by git clone ( provided git has been installed on your machine):
git clone https://github.com/KurtzmanLab/SSTMap.git
or you can also directly download the zip file by click the download botton on the webpage, then unzip it by:
##Step 4: Install the dependencies in case you do not have
conda install -c omnia mdtraj
sudo yum install gsl-devel
sudo apt-get install libgsl-dev ln path/to/libgsl.so path/to/libgsl.so.0
##Step 5: Install the compiler in case you do not have
sudo yum install g++
sudo apt-get install g++
##Step 6: Install the SSTMap by wheel
if you get the souce code by git clone:
pip install ./SSTMap/devtools/wheel/sstmap-1.1.4-cp36-cp36m-linux_x86_64.whl
if you get the source code by clicking the download button:
pip install ./SSTmap-master/devtools/wheel/sstmap-1.1.4-cp36-cp36m-linux_x86_64.whl
##Step 7: You have installed SSTMap successfully if you can run these two commands in your terminal (within the sstmap_py37 virtual environment)
If you have question regarding the installation of SSTMap, please contact us by email@example.com, we will be glad to help!